Journal: Frontiers in Cell and Developmental Biology

Article Title: Phenotypically Anchored mRNA and miRNA Expression Profiling in Zebrafish Reveals Flame Retardant Chemical Toxicity Networks

doi: 10.3389/fcell.2021.663032

Figure Lengend Snippet: mRNA expression for BDE-47, aryl phosphates and chlorinated phosphates. (A,C) Heatmaps representing log 2 fold changes of mRNA expression; colored bars on the rows represent mRNA clusters. Numbers within bars represent cluster numbers for specific mRNA sets. (B,D) GO processes for unique mRNAs that were increased or decreased uniquely in various clusters.

Article Snippet: GO terms with a false discovery rate (FDR) adjusted p ≤ 0.05 were considered significant and data was represented as heatmaps (GraphPad Prism 9, San Diego, CA, United States).

Techniques: Expressing

Journal: Biofilm

Article Title: Cold atmospheric pressure plasma-antibiotic synergy in Pseudomonas aeruginosa biofilms is mediated via oxidative stress response

doi: 10.1016/j.bioflm.2023.100122

Figure Lengend Snippet: Changes in the transcription (log 2 FC) of four genes related to the arginine deaminase system at 4 h, 6 h, and 24 h post-exposure to CAP. The error bars indicate the mean ± standard deviation determined from biological replicates ( n = 3 ).

Article Snippet: Heatmaps depicting pyoverdine and pyocyanin transcription were produced in GraphPad Prism 9.

Techniques: Standard Deviation

Journal: Biofilm

Article Title: Cold atmospheric pressure plasma-antibiotic synergy in Pseudomonas aeruginosa biofilms is mediated via oxidative stress response

doi: 10.1016/j.bioflm.2023.100122

Figure Lengend Snippet: Log 2 FC in the transcription of 11 genes related to CAP generated reactive oxygen and reactive nitrogen species defence at 4 h, 6 h, and 24 h post-exposure. The error bars indicate the mean ± standard deviation determined from biological replicates ( n = 3 ).

Article Snippet: Heatmaps depicting pyoverdine and pyocyanin transcription were produced in GraphPad Prism 9.

Techniques: Generated, Standard Deviation

Journal: Biofilm

Article Title: Cold atmospheric pressure plasma-antibiotic synergy in Pseudomonas aeruginosa biofilms is mediated via oxidative stress response

doi: 10.1016/j.bioflm.2023.100122

Figure Lengend Snippet: Log 2 FC in the transcription of 7 genes related to iron storage at 4 h, 6 h, and 24 h post-exposure. The error bars indicate the mean ± standard deviation determined from biological replicates ( n = 3 ).

Article Snippet: Heatmaps depicting pyoverdine and pyocyanin transcription were produced in GraphPad Prism 9.

Techniques: Standard Deviation

Journal: Frontiers in Immunology

Article Title: Integrated plasma metabolomic and cytokine analysis reveals a distinct immunometabolic signature in atopic dermatitis

doi: 10.3389/fimmu.2024.1354128

Figure Lengend Snippet: Non-targeted metabolomics profiling analysis of the plasma of atopic dermatitis (AD) patients and healthy controls (HC). For all scores plots, red=AD and green=HC. (A) PCA score plot with the first two components explaining for 80.1% of the variance. (B) PLS-DA score plot with the first two components explaining for 79.6% of the variance. (C) OPLS-DA score plot with the first two components explaining for 70% of the variance. (D) K-means clustering of groups. (E) Synchronized 3D scores and loading plots for visualization of the most influential compounds of the first three components on PCA. (F) Variable importance in projection (VIP) score ranking the most important metabolites.

Article Snippet: The heatmaps of data correlation between cytokines and metabolites were performed using Graphpad Prism 9.

Techniques: Clinical Proteomics

Journal: Frontiers in Immunology

Article Title: Integrated plasma metabolomic and cytokine analysis reveals a distinct immunometabolic signature in atopic dermatitis

doi: 10.3389/fimmu.2024.1354128

Figure Lengend Snippet: Metabolites with significant alterations in unmatched AD vs HC patients. (A) Volcano plot of significant fold change distribution of selected metabolites in AD versus HC (blue=significantly downregulated). (B) Boxplot summaries of the peak intensities of the significant metabolites (red=AD, green=HC). (C) Heatmap of the differential metabolites quantified in plasma in AD vs HC individuals using Euclidian distance measure and Ward clustering algorithm.

Article Snippet: The heatmaps of data correlation between cytokines and metabolites were performed using Graphpad Prism 9.

Techniques: Clinical Proteomics

Journal: Frontiers in Immunology

Article Title: Integrated plasma metabolomic and cytokine analysis reveals a distinct immunometabolic signature in atopic dermatitis

doi: 10.3389/fimmu.2024.1354128

Figure Lengend Snippet: Metabolites in atopic dermatitis patients with greater than two-fold change.

Article Snippet: The heatmaps of data correlation between cytokines and metabolites were performed using Graphpad Prism 9.

Techniques: